Generate a spectral library (TSV) from EasyPQP PSM and peak pickle files.
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
psmpkl
:file
One or more PSM pickle files produced by easypqp convert
*.psmpkl
peakpkl
One or more peak pickle files produced by easypqp convert, matching the PSM pickle files
*.peakpkl
tsv
${prefix}.tsv
Spectral library in TSV format
*.tsv
run_peaks
*_run_peaks.tsv
Per-run peak table written alongside the library
versions_easypqp
${task.process}
:string
The name of the process
easypqp
The name of the tool
easypqp --version | sed 's/.*version //'
:eval
The expression to obtain the version of the tool
versions
Python package to generate spectral libraries for data-independent acquisition (DIA) proteomics from DDA search results.
