1 advisory, 6 pipeline releases, 8 upcoming events.
 1st February 2023 |
Advisories
| lowKnown Regression Trimming parameters ignored in RNA-seq pipeline 3.10 <p>The clip parameters for read trimming remain without affect for that pipeline version</p> |
New pipeline first releases! 🎉
These pipelines just had their very first release.
| nf-core/differentialabundancev1.0.0v1.0.1 Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq |
Pipeline releases
Upcoming events
| BytesizeBytesize: nf-core/pre-commit | 7 Feb 2023 |
| <p>Matthias Hörtenhuber, Scilifelab Data Centre, Sweden</p> | |
| BytesizeBytesize: nf-core/crisprseq | 14 Feb 2023 |
| <p>Júlia Mir (QBiC, Tübingen University) and Marta Sanvincente (Pompeu Fabra University, Barcelona)</p> | |
| BytesizeBytesize: variantcatalogue | 21 Feb 2023 |
| <p>Solenne Correard, University of British Columbia, Vancouver, Canada</p> | |
| BytesizeBytesize: nf-core/mag | 28 Feb 2023 |
| <p>Sabrina Krakau - University Tübingen, QBiC</p> | |
| BytesizeBytesize: nf-core modules patch | 7 Mar 2023 |
| <p>Phil Ewels - Seqera Labs</p> | |
| Trainingnf-core Training - March 2023 | 13 Mar 2023 – 16 Mar 2023 |
| <p>A set of global online Nextflow and nf-core training events</p> | |
| BytesizeBytesize: nf-core/hgtseq | 21 Mar 2023 |
| <p>Francesco Lescai - Department of Biology and Biotechnology, University of Pavia</p> | |
| HackathonHackathon - March 2023 (Online) | 27 Mar 2023 – 29 Mar 2023 |
| <p>A virtual hackathon with local gatherings to develop nf-core together</p> | |
In case you missed it
New pipelines & proposals
nf-core/pathogensurveillanceNew repo
Surveillance of pathogens using population genomics and sequencing
Surveillance of pathogens using population genomics and sequencing
nf-core/viralmetagenomeNew repo
A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
This newsletter is brought to you by the nf-core community. Unsubscribe here. |