nf-core/newsletter, June 2024

Blog posts

• Maintainers Minutes: May 2024 — Keeping you informed of the latest maintainers discussions
  13 May 2024 · by jfy133

  

• nf-core/tools - 2.14.0 — Spring cleaning :broom:
  8 May 2024 · by mirpedrol, mashehu

  

New pipeline first releases 🎉

These pipelines just had their very first release.

• nf-core/callingcards v1.0.0 — A pipeline for processing calling cards data
• nf-core/fastquorum v1.0.0 — Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
• nf-core/viralmetagenome v0.1.1 — A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.

Pipeline releases

• nf-core/bamtofastq v2.1.1 (6 May 2024)
• nf-core/differentialabundance v1.5.0 (8 May 2024)
• nf-core/epitopeprediction v2.3.1 (17 May 2024)
• nf-core/mag v3.0.0 (13 May 2024)
• nf-core/pixelator v1.2.0 (28 May 2024)
• nf-core/raredisease v2.1.0 (29 May 2024)
• nf-core/rnasplice v1.0.4 (9 May 2024)
• nf-core/sarek v3.4.2 (7 May 2024)
• nf-core/scrnaseq v2.6.0 (7 May 2024)

Upcoming events

• Bytesize Bytesize: Explaining Wave containers — 11 Jun 2024
  <p>Phil Ewels, Seqera</p>
• Talk #animal-genomics: June Meeting — 19 Jun 2024
  <p>Yuliaxis Ramayo, Institute of Agrifood Research and Technology (IRTA), Spain</p>
• Bytesize Bytesize: Containers for HPC with Singularity — 25 Jun 2024
  <p>Marco Claudio De La Pierre, Seqera</p>
• Talk #regulatory: Kick Off Meeting — 1 Jul 2024
  <p>Round table led by Alex Peltzer (Boehringer Ingelheim Pharma GmbH)</p>
• Bytesize Bytesize: the `nf-core download` command — 9 Jul 2024
  <p>Matthias Zepper, National Genomics Infrastructure, Stockholm</p>
• Bytesize Bytesize: Six tips for community-based pipeline development — 16 Jul 2024
  <p>James A. Fellows Yates, HKI Jena / MPI-EVA Leipzig</p>
• Talk #animal-genomics: July Meeting — 17 Jul 2024
  <p>Cristina Casto Rebollo, Institute for Animal Science and Technology (ICTA), Universitat Politècnica de València, Spain</p>
• Bytesize Bytesize: nft-bam — 30 Jul 2024
  <p>Nicolas Vannieuwkerke, Center For Medical Genetics Ghent</p>

In case you missed it

Recent events

• Bytesize: Resolving merge conflicts after a tools release — 14 May 2024 (Bytesize)
• #animal-genomics: May Meeting — 15 May 2024 (Talk)
• Hackathon - May 2024 (Boston) — 21 May 2024 – 22 May 2024 (Hackathon)
• Bytesize: Get your containers with "Nextflow inspect" — 28 May 2024 (Bytesize)

Earlier blog posts

• nf-core/sarek paper — 24 Apr 2024
• March 2024 Hackathon — 7 Apr 2024
• Special Interest Groups — 2 Apr 2024

New pipelines & proposals

New pipeline repositories

• nf-core/demo — nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.
• nf-core/lsmquant — A pipeline for processing and analysis of light-sheet microscopy images.
• nf-core/pairgenomealign — Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
• nf-core/tbanalyzer (in development) — An nf-core (meta) pipeline for analysis of different members of Mycobacterium tuberculosis complex.